myRT

Putative Reverse transcriptases surveyed in:

Draft and complete bacterial genomes

Putative RTs in human and animals gut metagenomes (ref)

Putative RTs in pig gut metagenomes (ref)

Putative RTs in pig fecal phage metagenomes (ref)

Putative RTs in human gastrointestinal microbiota (ref)

Retron RTs in anti-phage defense systems (ref)

Putative RTs in IMP-4 containing plasmids (ref1; ref2)

Putative RTs in blaIMP-4 containing plasmids in complete and draft genomes

Zimmerly collection (ref)

SILAS collection (CRISPR-Cas associated RTs) (ref)

CRISPR-Cas associated RTs with Multiple origins (ref)

CRISPR-Cas RTs fused to primase domain (ref)

The training set, and predicted RTs in complete and draft genomes are downloadable from this link.

Putative RTs in Complete and Draft Bacterial Genomes

Click on the numbers to see the list of RTs in each class

Index	RT Class	In Complete Genomes	In Draft Genomes	Sum	%
1	AbiA	38	262	300	0.1
2	AbiK	112	3027	3139	1.09
3	AbiP2	226	2826	3052	1.06
4	CRISPR (CRISPRs RT w/ Cas genes)	142	2021	2163	0.75
5	CRISPR-like (CRISPR RTs w/o Cas genes)	73	1961	2034	0.71
5	CRISPR-other (Other RTs w/ Cas genes)	40	279	319	0.11
6	DGRs	459	16064	16523	5.76
7	G2L	167	23	190	0.07
8	G2Lb	15	9	24	0.01
9	G2Lc	4	19	23	0.01
10	G2L4	28	514	542	0.19
11	GII (Group II introns)	18848	162783	181631	63.31
12	Retrons	2973	30825	33798	11.78
13	UG1	71	682	753	0.26
14	UG2	399	3077	3476	1.21
15	UG3	199	1644	1843	0.64
16	UG4	228	2296	2524	0.88
17	UG5	213	2691	2904	1.01
18	UG6	101	71	172	0.06
19	UG7	151	1292	1443	0.5
20	UG8	215	2282	2497	0.87
21	UG9	31	365	396	0.14
22	UG10	28	207	235	0.08
23	UG11	119	3564	3683	1.28
24	UG12	94	728	822	0.29
25	UG13	20	271	291	0.1
26	UG14	38	208	246	0.09
27	UG15	82	1098	1180	0.41
28	UG16	20	243	263	0.09
29	UG17	177	2023	2200	0.77
30	UG18	58	196	254	0.09
31	UG19	15	242	257	0.09
32	UG20	9	73	82	0.03
33	UG21	2	27	29	0.01
34	UG22	16	66	82	0.03
35	UG23	21	70	91	0.03
36	UG24	13	144	157	0.05
37	UG25	10	102	112	0.04
38	UG26	5	823	828	0.29
39	UG27	12	424	436	0.15
40	UG28	47	352	399	0.14
41	UG28b	9	230	239	0.08
42	UNC	78	2329	2407	0.84
	Sum	25566	248154	273720	100

Putative RTs in human and animals gut metagenomes (ref)

index	gut metagenome	Source>	myRT results	myDGR results
1	ERR248260	Chicken	myRT prediction	myDGR prediction
2	ERR248261	Cow	myRT prediction	myDGR prediction
3	ERR248262	Human	myRT prediction	myDGR prediction
4	ERR248263	Pig	myRT prediction	myDGR prediction

Putative RTs in pig gut metagenomes (ref)

index	gut metagenome	myRT results	myDGR results
1	ERR1135178	myRT prediction	myDGR prediction
2	ERR1135179	myRT prediction	myDGR prediction
3	ERR1135180	myRT prediction	myDGR prediction
4	ERR1135181	myRT prediction	myDGR prediction

Putative RTs in pig fecal phage metagenomes (ref)

index	Metagenome	myRT results	% DGR RTs
1	SRR358775	myRT prediction	96%
2	SRR358778	myRT prediction	87%
3	SRR358780	myRT prediction	100%
4	SRR358782	myRT prediction	96%
5	SRR358784	myRT prediction	97%
6	SRR358781	myRT prediction	86%
7	SRR358785	myRT prediction	89%
8	SRR358788	myRT prediction	87%
9	SRR358790	myRT prediction	98%

Retron RTs in anti-phage defense systems (ref)

index	Known Retron	Gene coordinates	myRT prediction	Genomic neighborhood	%identity*
1	EC107	JYPB01000057.1_50616_51575_-	myRT prediction	dut,slmA,RVT-Retrons,pyrE,rph	95
2	EC48	LFQP01000005.1_154506_155696_-	myRT prediction	RVT-Retrons,RVT-AbiP2,Phage_GPA	44
3	EC67	CP010229.1_4712073_4713833_-	myRT prediction	P,Q,RVT-Retrons,DinI	50
4	EC73	CP010200.1_2393178_2394128_+	myRT prediction	Prim_Zn_Ribbon,COG3378,RVT-Retrons,COG3943,PRK15011	35
5	Ec78	JHRW01000018.1_27622_28557_+	myRT prediction	AAA_23,Smc,RVT-Retrons,COG3950,TIGR02646	46
6	EC86	CP001509.3_878975_879937_+	myRT prediction	RVT-Retrons,Q,P	100
7	Mx162	FNOH01000007.1_211326_212783_+	myRT prediction	WD40,HEAT_2*12,RVT-Retrons,DAP2,BetA*3	100
8	Mx65	FNOH01000027.1_37959_39242_+	myRT prediction	RVT-Retrons,COG3791,EpmB*2	47
9	Eco8	CYGJ01000003.1_369367_370491_+	myRT prediction	AAA_15,RVT-Retrons,HTH_36	44
10	Se72	AMMS01000284.1_2640_3671_-	myRT prediction	Rop,CspC,RVT-Retrons	44
11	St85	LDYH01000006.1_757289_758224_-	myRT prediction	PRK10216,PRK10473,RVT-Retrons	100
12	Vc137	JNEW01000012.1_609188_610135_+	myRT prediction	PRK10621,RVT-Retrons,carB	44
13	Vc95	JRBD01000006.1_125638_126585_-	myRT prediction	TIGR02646,RVT-Retrons,PRK10621,LysR	100
14	Vp96	AWJG01000250.1_32_1054_+	myRT prediction	COG3950,RVT-Retrons	49
15	YF79	KN150731.1_1692670_1693602_-	myRT prediction	TIGR02646,COG3950,RVT-Retrons,DUF4263,INT_Lambda_C	48
16	EC83	CXYK01000012.1_74586_75524_+	myRT prediction	proA,RVT-Retrons,COG3950,TIGR02646	47

*This column lists the highest sequence identity between the predicted RT and the RVT_1 domains used to build the HMMs for the different classes of RTs.

Putative RTs in IMP-4 containing plasmids (ref1, ref2)

index	Accession NO.	myRT results	Source
1	KM977631.1	myRT prediction	KM977631.1 Klebsiella pneumoniae strain CRE1495 plasmid pIMP-1495, complete sequence
2	KT982613.1	myRT prediction	KT982613.1 Klebsiella pneumoniae strain CRE 1496 plasmid pIMP1496, complete sequence
3	KT982615.1	myRT prediction	KT982615.1 Escherichia coli strain CRE1505 plasmid pIMP-FS1505, complete sequence
4	KT982616.1	myRT prediction	KT982616.1 Escherichia coli strain CRE1509 plasmid pIMP-HK1509, complete sequence
5	KT982618.1	myRT prediction	KT982618.1 Escherichia coli strain CRE1517 plasmid pIMP-GZ1517, complete sequence
6	KT989376.1	myRT prediction	KT989376.1 Escherichia coli strain CRE1515 plasmid pIMP-SZ1515, complete sequence
7	KT989598.1	myRT prediction	KT989598.1 Enterobacter cloacae strain CRE1506 plasmid pIMP-SH1506, complete sequence
8	KU051707.1	myRT prediction	KU051707.1 Escherichia coli strain CRE1502 plasmid pIMP-SZ1502, complete sequence
9	KU051708.1	myRT prediction	KU051708.1 Klebsiella pneumoniae strain CRE1501 plasmid pIMP-SZ1501, complete sequence
10	KU051709.1	myRT prediction	KU051709.1 Escherichia coli strain CRE1058 plasmid pIMP-GZ1058, complete sequence
11	KU051710.1	myRT prediction	KU051710.1 Citrobacter freundii strain CRE1503 plasmid pIMP-FJ1503, complete sequence
12	KU726588.1	myRT prediction	KU726588.1 Escherichia coli strain CRE1516 plasmid pIMP-DS1516, complete sequence
13	KU862632.1	myRT prediction	KU862632.1 Klebsiella pneumoniae strain CRE1495 plasmid pIMP-KP1495, complete sequence
14	KU886034.1	myRT prediction	KU886034.1 Klebsiella pneumoniae strain Kp1 plasmid pIMP-HZ1, complete sequence
15	KX711879.1	myRT prediction	KX711879.1 Pseudomonas aeruginosa strain P378 plasmid P378-IMP, complete sequence
16	KX711880.1	myRT prediction	KX711880.1 Klebsiella pneumoniae strain 1220 plasmid p1220-IMP, complete sequence
17	KY913900.1	myRT prediction	KY913900.1 Klebsiella oxytoca strain pKOX3 plasmid p4-IPM, complete sequence
18	MF072962.1	myRT prediction	MF072962.1 Citrobacter freundii strain P10159 plasmid pP10159-2, complete sequence
19	MF344557.1	myRT prediction	MF344557.1 Klebsiella pneumoniae strain 10677 plasmid p10677-IMP, complete sequence
20	MF344559.1	myRT prediction	MF344559.1 Enterobacter hormaechei strain 128379 plasmid p128379-IMP, complete sequence
21	CP028486.1	myRT prediction	CP028486.1 Escherichia coli strain E41-1 plasmid p3, complete sequence
22	MH399264.1	myRT prediction	MH399264.1 Enterobacter cloacae strain RJ702 plasmid pIMP26, complete sequence
23	CP033103.1	myRT prediction	CP033103.1 Enterobacter hormaechei strain L51 plasmid pEHZJ1, complete sequence

Putative RTs in blaIMP-4 containing plasmids in complete and draft genomes

index	RT coordinates	myRT results	Source
1	CP021328.1_367010_367631_+	myRT prediction	CP021328.1 Raoultella ornithinolytica strain Ro24724 plasmid pRo24724
2	CP028952.1_32191_32812_+	myRT prediction	CP028952.1 Klebsiella aerogenes strain AR_0161 plasmid unnamed
3	CP028486.1_14463_15084_-	myRT prediction	CP028486.1 Escherichia coli strain E41-1 plasmid p3
4	CP030080.1_280102_280723_+	myRT prediction	CP030080.1 Enterobacter hormaechei strain 20710 plasmid pIMP-20710
5	CP040895.1_46257_46878_+	myRT prediction	CP040895.1 Leclercia adecarboxylata strain Z96-1 plasmid pIMP-Z96-1
6	KQ089505.1_6269_6890_-	myRT prediction	KQ089505.1 Klebsiella quasipneumoniae strain MGH113 genomic scaffold aeurF-supercont1.11
7	RXMC01000045.1_2706_3327_-	myRT prediction
8	RXMP01000055.1_1441_2062_+	myRT prediction
9	RXMR01000029.1_41905_42526_-	myRT prediction

Putative Reverse Transcriptases (ref)

index	Accession number	Gene Coordinates	myRT results	Class	myRT prediction
1	CAA78293.1	CAA78293.1	myRT prediction	Retrons	Retrons
2	AAM42896.1	AAM42896.1	myRT prediction	Retrons	Retrons
3	AFY43443.1	AFY43443.1	myRT prediction	GII_like_1 (CRISPR)	CRISPR
4	AGI67543.1	AGI67543.1	myRT prediction	GII_like_3 (UG10)	UG3
5	ZP_01854760.1	ZP_01854760.1	myRT prediction	GII_like_5	G2Lb
6	ZP_01851752.1	ZP_01851752.1	myRT prediction	GII_like_5	CRISPR-like
7	EKP98429.1	EKP98429.1	myRT prediction	UG2	UG2
8	CCC73043.1	CCC73043.1	myRT prediction	UG2	UG2
9	AEG09910.1	AEG09910.1	myRT prediction	UG2	UG2
10	AEW72297.1	AEW72297.1	myRT prediction	UG3	UG3
11	ACD38707.1	ACD38707.1	myRT prediction	UG3	UG3
12	AHE72406.1	AHE72406.1	myRT prediction	UG4	UG4
13	AGI74246.1	AGI74246.1	myRT prediction	UG4	UG4
14	CDI94624.1	CDI94624.1	myRT prediction	UG5	UG5
15	AHM47056.1	AHM47056.1	myRT prediction	UG5	UG5
16	ACU61669.1	ACU61669.1	myRT prediction	UG6	UG6
17	AHL77683.1	AHL77683.1	myRT prediction	UG8	UG8
18	AEN62840.1	AEN62840.1	myRT prediction	UG8	UG8
19	AFG37103.1	AFG37103.1	myRT prediction	UG8	UG8
20	ADI30165.1	ADI30165.1	myRT prediction	UG9	UG9
21	AGA65410.1	AGA65410.1	myRT prediction	UG14	UG14

Putative CRISPR-Cas associated RTs (ref)

index	Genome	Gene coordinates	myRT results	Prediction	%identity*
1	ASPN01000006.1	ASPN01000006.1_20247_22901_+	myRT prediction	CRISPR	34
2	AQRP01000065.1	AQRP01000065.1_13318_16137_+	myRT prediction	CRISPR	35
3	JXXW01000010.1	JXXW01000010.1_71385_73319_+	myRT prediction	CRISPR	60
4	ASAJ01000015.1	ASAJ01000015.1_125843_128860_-	myRT prediction	CRISPR	57
5	KL370780.1	KL370780.1_93557_95149_+	myRT prediction	CRISPR	36
6	JWIO01000025.1	JWIO01000025.1_10124_11221_+	myRT prediction	CRISPR	38
7	BCQS01000026.1	BCQS01000026.1_4694_5707_-	myRT prediction	CRISPR	41
8	JH470356.1	JH470356.1_27166_28113_+	myRT prediction	CRISPR	77
9	LLVU01000015.1	LLVU01000015.1_5740_7752_-	myRT prediction	CRISPR	58
10	LOAS01000028.1	LOAS01000028.1_37027_38064_-	myRT prediction	CRISPR	48
11	JYJP01000030.1	JYJP01000030.1_21534_23426_+	myRT prediction	CRISPR	75
12	JH992891.1	JH992891.1_86001_86924_-	myRT prediction	CRISPR	75
13	ANNX01000115.1	ANNX01000115.1_14418_15371_-	myRT prediction	CRISPR	77
14	ALWD01000163.1	ALWD01000163.1_24045_25013_+	myRT prediction	CRISPR	85
15	ANNX01000117.1	ANNX01000117.1_21795_22772_-	myRT prediction	CRISPR	86
16	JH992901.1	JH992901.1_1016250_1017311_+	myRT prediction	CRISPR	81
17	JXCA01000005.1	JXCA01000005.1_398870_399850_-	myRT prediction	CRISPR	82
18	ALVY01000183.1	ALVY01000183.1_27387_28304_+	myRT prediction	CRISPR	70
19	HE972669.1	HE972669.1_45936_46913_-	myRT prediction	CRISPR	72
20	ALWB01000016.1	ALWB01000016.1_12151_14244_-	myRT prediction	CRISPR	65
21	ASMA01000004.1	ASMA01000004.1_21607_22458_+	myRT prediction	CRISPR	46
22	JQFA01000004.1	JQFA01000004.1_1149670_1151637_-	myRT prediction	CRISPR	86
23	AJLK01000155.1	AJLK01000155.1_941_2959_-	myRT prediction	CRISPR	87
24	ASZN01000033.1	ASZN01000033.1_1862_3346_-	myRT prediction	CRISPR	53
25	LAQJ01000220.1	LAQJ01000220.1_7006_7917_-	myRT prediction	CRISPR	37
26	KK211136.1	KK211136.1_10156_11052_-	myRT prediction	CRISPR	62
27	LAKD01000050.1	LAKD01000050.1_46946_48151_-	myRT prediction	CRISPR	25
28	BAFN01000001.1	BAFN01000001.1_294229_295173_+	myRT prediction	CRISPR-like	72
29	AJKO01000007.1	AJKO01000007.1_124518_125894_-	myRT prediction	UG2	34
30	DS570667.1	DS570667.1_23830_25101_-	myRT prediction	UNC-CRISPR	30
31	CP007699.1	CP007699.1_7617452_7618696_+	myRT prediction	UNC-CRISPR	38

*This column lists the highest sequence identity between the predicted RT and the RVT_1 domains used to build the HMMs for the different classes of RTs.

Putative CRISPR-Cas associated RTs with multiple origins (ref)

index	Genome	myRT results	Prediction/Origin
1	Streptomyces flaveus strain NRRL ISP‐5371	myRT prediction	UNC-CRISPR
2	Streptomyces griseoflavus	myRT prediction	CRISPR-like
3	Streptomyces lydicus	myRT prediction	CRISPR-like
4	Streptomyces antioxidans	myRT prediction	CRISPR-like
5	Streptomyces sp. ScaeMP‐e10	myRT prediction	CRISPR-like
6	Streptomyces clavuligerus ATCC 27064	myRT prediction	UNC-CRISPR
7	Cetobacterium ceti	myRT prediction	CRISPR
8	Deltaproteobacteria bacterium HGW‐Deltaproteobacteria‐9	myRT prediction	CRISPR+Cas1
9	Anaerolineae bacterium CG_4_9_14_3_um_filter_57_17	myRT prediction	GII+Cas1
10	Fischerella sp. PCC 9339	myRT prediction	CRISPR
11	Calothrix sp. PCC 7103	myRT prediction	CRISPR
12	Scytonema hofmannii PCC 7110	myRT prediction	CRISPR
13	Scytonema hofmanni UTEX 2349	myRT prediction	CRISPR
14	Nostoc sp. 'Peltigera membranacea cyanobiont' 232	myRT prediction	CRISPR
15	Mastigocladus laminosus UU774	myRT prediction	CRISPR
16	Planktothrix sp. PCC 11201 strain BBR_PRJEB10991	myRT prediction	CRISPR
17	Gloeocapsa sp. PCC 73106	myRT prediction	CRISPR
18	Microcystis aeruginosa PCC 9717	myRT prediction	CRISPR
19	Microcystis aeruginosa PCC 9701	myRT prediction	CRISPR-like
20	Limnothrix rosea IAM M-220	myRT prediction	CRISPR+Cas1
21	Elainella saxicola E1	myRT prediction	CRISPR+Cas1
22	Leptolyngbya sp. 'hensonii'	myRT prediction	CRISPR+Cas1
23	Vibrio sp. PID17_43	myRT prediction	CRISPR+Cas1
24	Vibrio mexicanus strain CAIM 1540	myRT prediction	CRISPR+Cas1
25	Vibrio sp. UBA2437	myRT prediction	CRISPR+Cas1
26	Ignavibacteria bacterium GWB2_35_6b	myRT prediction	CRISPR
27	Candidatus Brocadia sinica JPN1	myRT prediction	CRISPR-like
28	delta proteobacterium ML8_D strain ML8_D	myRT prediction	CRISPR
29	Deltaproteobacteria bacterium CG_4_10_14_0_8_um_filter_43_12	myRT prediction	CRISPR
30	Candiadtus Scalindua japonica husup-a2	myRT prediction	CRISPR
31	Candidatus Methylomirabilis oxyfera strain Ru_enrich_MO1	myRT prediction	CRISPR
32	Ignavibacteriales bacterium CG12_big_fil_rev_8_21_14_0_65_30_8	myRT prediction	CRISPR+Cas1
33	Candidatus Marinimicrobia bacterium CG08_land_8_20_14_0_20_45_22	myRT prediction	Cas6+CRISPR+Cas1
34	Nitrospirae bacterium CG01_land_8_20_14_3_00_44_22	myRT prediction	CRISPR+Cas1
35	Thiotrichaceae bacterium	myRT prediction	CRISPR+Cas1
36	Desulfobulbus propionicus	myRT prediction	CRISPR+Cas1
37	Methylomonas sp.	myRT prediction	CRISPR+Cas1
38	Nitrosomonas marina strain Nm71	myRT prediction	CRISPR+Cas1
39	Acidithiobacillus caldus strain DX	myRT prediction	CRISPR+Cas1
40	Gammaproteobacteria bacterium RIFOXYA12_FULL_61_12	myRT prediction	CRISPR+Cas1
41	Roseobacter sp. MedPE‐SWchi	myRT prediction	CRISPR+Cas1
42	Rhodobacterales bacterium	myRT prediction	CRISPR+Cas1
43	Rhodovulum sp. MB263	myRT prediction	CRISPR+Cas1
44	Rhodopseudomonas palustris PSBS	myRT prediction	CRISPR+Cas1
45	Stappia sp. TSB10GB4	myRT prediction	CRISPR+Cas1
46	Roseospirillum parvum	myRT prediction	CRISPR+Cas1
47	Cohaesibacter sp. ES.047	myRT prediction	CRISPR+Cas1
48	Puniceibacterium sediminis	myRT prediction	CRISPR
49	Deinococcus marmoris DSM 12784	myRT prediction	CRISPR
50	Pseudoruegeria sabulilitoris strain GJMS‐35	myRT prediction	CRISPR
51	Thauera selenatis AX	myRT prediction	CRISPR+Cas1
52	Thiomonas sp. 13‐66‐29	myRT prediction	CRISPR+Cas1
53	Vitreoscilla filiformis	myRT prediction	CRISPR+Cas1
54	Burkholderiales bacterium RIFOXYC12_FULL_65_23	myRT prediction	CRISPR+Cas1
55	candidate division WS1 bacterium JGI 0000059‐K21	myRT prediction	CRISPR
56	Streptomyces sp. AVP053U2	myRT prediction	CRISPR+Cas1
57	Streptomyces thermovulgaris	myRT prediction	CRISPR+Cas1
58	Thermobifida halotolerans	myRT prediction	CRISPR+Cas1
59	Pseudonocardia oroxyli strain CGMCC 4.3143	myRT prediction	CRISPR
60	Frankia coriariae	myRT prediction	CRISPR
61	Actinopolyspora saharensis	myRT prediction	CRISPR+Cas1
62	Rhodococcus enclensis	myRT prediction	CRISPR+Cas1
63	Tessaracoccus bendigoensis DSM 12906	myRT prediction	CRISPR+Cas1
64	Micrococcales bacterium	myRT prediction	CRISPR+Cas1
65	Skermania piniformis NBRC 15059	myRT prediction	CRISPR+Cas1
66	Corynebacterium sp. HMSC073D01	myRT prediction	CRISPR+Cas1
67	Actinomyces sp. 553	myRT prediction	CRISPR+Cas1
68	Actinomyces sp. oral taxon 414	myRT prediction	CRISPR+Cas1
69	Actinomyces naeslundii	myRT prediction	CRISPR
70	Gammaproteobacteria bacterium	myRT prediction	CRISPR+Cas1
71	Methylovulum psychrotolerans strain HV10_M2	myRT prediction	CRISPR
72	Deltaproteobacteria bacterium strain ER2bin7	myRT prediction	CRISPR
73	Desulfobacterium vacuolatum DSM 3385 strain DSM 3385	myRT prediction	CRISPR
74	Acidihalobacter prosperus strain V6	myRT prediction	CRISPR
75	Proteobacteria bacterium strain DOLZORAL124_50_18	myRT prediction	CRISPR
76	Nitrosomonas cryotolerans	myRT prediction	CRISPR
77	Acetothermia bacterium UBA3560	myRT prediction	CRISPR
78	Anaerolineales bacterium UBA3905	myRT prediction	CRISPR
79	Chloroflexi bacterium strain JP1_8	myRT prediction	CRISPR
80	Poribacteria bacterium WGA‐3G	myRT prediction	CRISPR
81	Chloroflexus islandicus strain isl-2	myRT prediction	CRISPR
82	Anaerolineales bacterium JdFR‐64	myRT prediction	CRISPR-like
83	Anaerolineae bacterium CG17_big_fil_post_rev_8_21_14_2_50_57_27	myRT prediction	CRISPR
84	Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22	myRT prediction	GII+GIIM+TPR+COG4951
85	Anaerolineae bacterium CG2_30_64_16	myRT prediction	CRISPR
86	Anaerolineaceae bacterium CAMBI-1	myRT prediction	CRISPR
87	Ornatilinea apprima strain P3M‐1	myRT prediction	NoRT found (Cas1 w/o RT)
88	Methylocaldum sp. 14B	myRT prediction	Cas6+CRISPR+Cas1
89	Gammaproteobacteria bacterium	myRT prediction	CRISPR+Cas1
90	Gammaproteobacteria bacterium	myRT prediction	CRISPR+Cas1
91	Zetaproteobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_13	myRT prediction	Cas6+CRISPR+Cas1
92	Piscirickettsiaceae bacterium CG_4_10_14_0_8_um_filter_44_742	myRT prediction	Cas6+CRISPR+Cas1
93	Vibrio gazogenes strain CECT 5068T	myRT prediction	Cas6+CRISPR+Cas1
94	Vibrio gazogenes DSM 21264 = NBRC 103151	myRT prediction	Cas6+CRISPR+Cas1
95	Gammaproteobacteria bacterium strain DOLJORAL78_49_22	myRT prediction	Cas6+CRISPR+Cas1
96	Pseudoalteromonas piscicida strain S2040	myRT prediction	CRISPR+Cas6
97	Thermodesulfovibrio sp. N1	myRT prediction	CRISPR+Cas1
98	Verrucomicrobia bacterium UBA6176	myRT prediction	CRISPR+Cas1
99	Desulfovibrio sp. K3S	myRT prediction	CRISPR+Cas1
100	Desulfovibrio sp. UBA6079	myRT prediction	Cas6+CRISPR+Cas1
101	Desulfobulbaceae bacterium A2	myRT prediction	CRISPR+Cas1
102	Rhodoferax sp. UBA4127	myRT prediction	CRISPR+Cas1
103	Desulfobacteraceae bacterium UBA5605	myRT prediction	CRISPR+Cas1
104	Cloacimonetes bacterium UBA6081	myRT prediction	CRISPR
105	Phormidium ambiguum IAM M-71	myRT prediction	CRISPR+Cas1
106	Planktothrix tepida PCC 9214	myRT prediction	CRISPR+Cas1
107	Phormidium sp. HE10JO	myRT prediction	CRISPR+Cas1
108	Spirulina major PCC 6313	myRT prediction	CRISPR+Cas1
109	Dethiosulfovibrio salsuginis strain USBA 82	myRT prediction	CRISPR
110	Fimbriiglobus ruber strain SP5	myRT prediction	CRISPR
111	Bacteroidales bacterium UBA4639	myRT prediction	CRISPR+Cas1
112	Odoribacter sp. Marseille-P2698	myRT prediction	CRISPR+Cas1
113	Saprospiraceae bacterium UBA2365	myRT prediction	CRISPR+Cas1
114	Paludibacter sp. 47‐17	myRT prediction	CRISPR+Cas1
115	Deltaproteobacteria bacterium	myRT prediction	CRISPR+GIIM+Cas1
116	Ignavibacteriales bacterium UTCHB3 strain UTCHB3	myRT prediction	CRISPR
117	Bacteroidales bacterium UBA5537	myRT prediction	CRISPR+GIIM+Cas1
118	Candidatus Cloacimonetes bacterium	myRT prediction	CRISPR+GIIM+Cas1
119	candidate division KSB1 bacterium 4484_188 strain 4484_188	myRT prediction	CRISPR+GIIM
120	Bacteroidetes bacterium	myRT prediction	Cas6+CRISPR+Cas1
121	Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9	myRT prediction	CRISPR+Cas1
122	Sulfurimonas sp. RIFOXYD2_FULL_37_8	myRT prediction	CRISPR
123	Sulfurospirillum sp. UBA6791	myRT prediction	CRISPR+Cas1
124	Sulfurimonas sp. RIFOXYB12_FULL_35_9	myRT prediction	CRISPR+Cas1
125	Arcobacter thereius LMG 24486	myRT prediction	CRISPR+Cas1
126	Campylobacter concisus Lasto220.96	myRT prediction	CRISPR+Cas1
127	Campylobacter jejuni	myRT prediction	CRISPR+Cas1
128	Nitratiruptor tergarcus DSM 16512	myRT prediction	CRISPR+GIIM+Cas1
129	[Eubacterium] rectale strain AF06-19	myRT prediction	CRISPR
130	Eubacterium sp. 38_16	myRT prediction	CRISPR+cas1_HMARI
131	Lachnospiraceae bacterium C10	myRT prediction	CRISPR+cas1_HMARI
132	Ruminococcaceae bacterium P7	myRT prediction	UNC+cas1_HMARI
133	Lachnospiraceae bacterium UBA1066	myRT prediction	CRISPR-like+COG4951
134	Lachnospiraceae bacterium UBA4364	myRT prediction	CRISPR+COG4951
135	Geobacillus lituanicus strain N‐3	myRT prediction	CRISPR+COG4951
136	Anoxybacillus thermarum strain AF/04	myRT prediction	CRISPR+COG4951
137	Bacillus sp. SA5d‐4	myRT prediction	CRISPR+COG4951
138	Candidatus Magnetoglobus multicellularis str. Araruama	myRT prediction	CRISPR+COG4951
139	Fusibacter sp. 3D3	myRT prediction	CRISPR+Primase
140	Candidatus Magnetoglobus multicellularis str. Araruama	myRT prediction	CRISPR+COG4951
141	Firmicutes bacterium UBA5625	myRT prediction	CRISPR+COG4951
142	Armatimonadetes bacterium UBA5377	myRT prediction	CRISPR-like
143	Lutibacter maritimus	myRT prediction	Retron-CRISPR
144	Lutibacter sp. LP1	myRT prediction	Retron-CRISPR
145	Roseivirga sp. UBA6061	myRT prediction	Retron-CRISPR
146	Cyclobacterium halophilum	myRT prediction	Retron-CRISPR
147	Lewinella agarilytica strain DSM 24740	myRT prediction	Retron-CRISPR
148	Haliscomenobacter hydrossis DSM 1100	myRT prediction	Retron-CRISPR
149	Phaeodactylibacter xiamenensis KD52	myRT prediction	Retron-CRISPR
150	Cytophagales bacterium TFI 002	myRT prediction	Retron-CRISPR
151	Haliscomenobacter hydrossis DSM 1100	myRT prediction	Retron-CRISPR
152	Saprospiraceae bacterium UBA2329	myRT prediction	Retron-CRISPR
153	Caloramator australicus RC3	myRT prediction	CRISPR+ligD_pol
154	Basfia succiniciproducens	myRT prediction	AbiP2-CRISPR
155	Haemophilus haemolyticus HK386	myRT prediction	AbiP2-CRISPR
156	Fusicatenibacter saccharivorans	myRT prediction	CRISPR+Cas1

CRISPR-Cas RTs fused to primase (COG4951) domain (ref)

index	GI	Accession number	Contig	Genome	myRT results
1	1199433876	OUQ50181.1	NFLQ01000008.1	Lachnoclostridium sp. An118	myRT prediction
2	1052850879	SCJ09347.1	FMGE01000008.1	uncultured Clostridium sp.	myRT prediction
3	524753061	CDE54378.1	FR900183.1	Roseburia sp. CAG:303	myRT prediction
4	1222070497	WP_090127331.1	FCNR01000042.1	Eubacteriaceae bacterium CHKCI004	myRT prediction
5	1052930533	SCJ79569.1	FMGY01000027.1	uncultured Lachnospira sp.	myRT prediction
6	1236125999	WP_094925697.1	NPIA01000007.1	Bacillus sp. SA5d-4	myRT prediction
7	763085032	KIQ94502.1	JXTH01000022.1	Anoxybacillus thermarum strain AF/04	myRT prediction
8	1229394848	ASS88148.1	CP017692.1	Geobacillus lituanicus strain N-3	myRT prediction
9	571787965	ETR68993.1	ATBP01000769.1	Candidatus Magnetoglobus multicellularis str. Araruama	myRT prediction
10	1483099363	RJQ63776.1	QZKK01000034.1	Desulfobacteraceae bacterium isolate SURF_15	myRT prediction
11	1079178442	OFI07052.1	LZFO01000005.1	Clostridium acetireducens DSM 10703	myRT prediction

Also check entries with CRISPR+COG4951 label in this table, and look for RVT-CRISPR here.

Putative RTs in human gastrointestinal microbiota (ref)

index	Identifier	myRT results
1	ERR1022271	myRT prediction
2	ERR2230141	myRT prediction
3	ERR2230119	myRT prediction
4	ERR1022414	myRT prediction
5	ERR2221211	myRT prediction
6	ERR1022413	myRT prediction
7	ERR2230138	myRT prediction
8	ERR2221142	myRT prediction
9	ERR2221151	myRT prediction
10	ERR1022353	myRT prediction
11	ERR1022439	myRT prediction
12	ERR1203972	myRT prediction
13	ERR1022318	myRT prediction
14	ERR2221161	myRT prediction
15	ERR2221398	myRT prediction
16	ERR2221275	myRT prediction
17	ERR1022423	myRT prediction
18	ERR1022437	myRT prediction
19	ERR171257	myRT prediction