myRT


Putative Reverse transcriptases surveyed in:

  • Draft and complete bacterial genomes
  • Putative RTs in human and animals gut metagenomes (ref)
  • Putative RTs in pig gut metagenomes (ref)
  • Putative RTs in pig fecal phage metagenomes (ref)
  • Putative RTs in human gastrointestinal microbiota (ref)
  • Retron RTs in anti-phage defense systems (ref)
  • Putative RTs in IMP-4 containing plasmids (ref1; ref2)
  • Putative RTs in blaIMP-4 containing plasmids in complete and draft genomes
  • Zimmerly collection (ref)
  • SILAS collection (CRISPR-Cas associated RTs) (ref)
  • CRISPR-Cas associated RTs with Multiple origins (ref)
  • CRISPR-Cas RTs fused to primase domain (ref)

  • The training set, and predicted RTs in complete and draft genomes are downloadable from this link.



    Putative RTs in Complete and Draft Bacterial Genomes

    Click on the numbers to see the list of RTs in each class

    IndexRT ClassIn Complete Genomes In Draft GenomesSum%
    1AbiA 29 2522810.1
    2AbiK 108 302431321.13
    3AbiP2 226 282630521.1
    4CRISPR (CRISPR RT w/ Cas genes) 143 204621890.79
    5CRISPR-like (CL) 175 304032151.16
    6CRISPR-like2 (CRISPR RT w/o Cas genes) 114 198020940.76
    7CRISPR-like3 (Other RT w/ Cas genes) 40 2723120.11
    8DGRs 458 15997164555.93
    9G2L4 29 5145430.2
    10GII (Group II introns) 18844 16259318143765.42
    11Retrons 3056 307903384612.2
    12UG1 71 6857560.27
    13UG2 398 306534631.25
    14UG3 200 164318430.66
    15UG4 234 232825620.92
    16UG5 213 269329061.05
    17UG6 101 731740.06
    18UG7 151 130114520.52
    19UG8 218 229625140.91
    20UG9 31 3744050.15
    21UG10 26 2132390.09
    22UG11 35 356536001.3
    23UG12 95 7428370.3
    24UG13 20 2682880.1
    25UG14 32 1752070.07
    26UG15 82 109511770.42
    27UG16 20 2402600.09
    28UG17 178 202322010.79
    29UG18 52 1942460.09
    30UG19 16 2562720.1
    31UG20 9 72810.03
    32UG21 2 25270.01
    33UG22 16 66820.03
    34UG23 21 921130.04
    35UG24 12 1401520.05
    36UG25 6 2642700.1
    37UG26 4 8208240.3
    38UG27 4 4084120.15
    39UG28b 6 2302360.09
    40UG28 47 3513980.14
    41UNC 88 208121690.78
    42 Sum 25570250840276410100

    Putative RTs in human and animals gut metagenomes (ref)

    indexgut metagenomeSource>myRT resultsmyDGR results
    1ERR248260Chicken myRT prediction myDGR prediction
    2ERR248261Cow myRT prediction myDGR prediction
    3ERR248262Human myRT prediction myDGR prediction
    4ERR248263Pig myRT prediction myDGR prediction


    Putative RTs in pig gut metagenomes (ref)

    indexgut metagenomemyRT resultsmyDGR results
    1ERR1135178 myRT prediction myDGR prediction
    2ERR1135179 myRT prediction myDGR prediction
    3ERR1135180 myRT prediction myDGR prediction
    4ERR1135181 myRT prediction myDGR prediction


    Putative RTs in pig fecal phage metagenomes (ref)

    indexMetagenomemyRT results% DGR RTs
    1SRR358775 myRT prediction 96%
    2SRR358778 myRT prediction 87%
    3SRR358780 myRT prediction 100%
    4SRR358782 myRT prediction 96%
    5SRR358784 myRT prediction 97%
    6SRR358781 myRT prediction 86%
    7SRR358785 myRT prediction 89%
    8SRR358788 myRT prediction 87%
    9SRR358790 myRT prediction 98%


    Retron RTs in anti-phage defense systems (ref)

    indexKnown RetronGene coordinates myRT predictionGenomic neighborhood%identity*
    1EC107JYPB01000057.1_50616_51575_- myRT prediction dut,slmA,RVT-Retrons,pyrE,rph95
    2EC48LFQP01000005.1_154506_155696_- myRT prediction RVT-Retrons,RVT-AbiP2,Phage_GPA44
    3EC67CP010229.1_4712073_4713833_- myRT prediction P,Q,RVT-Retrons,DinI50
    4EC73CP010200.1_2393178_2394128_+ myRT prediction Prim_Zn_Ribbon,COG3378,RVT-Retrons,COG3943,PRK1501135
    5Ec78JHRW01000018.1_27622_28557_+ myRT prediction AAA_23,Smc,RVT-Retrons,COG3950,TIGR0264646
    6EC86CP001509.3_878975_879937_+ myRT prediction RVT-Retrons,Q,P100
    7Mx162FNOH01000007.1_211326_212783_+ myRT prediction WD40,HEAT_2*12,RVT-Retrons,DAP2,BetA*3100
    8Mx65FNOH01000027.1_37959_39242_+ myRT prediction RVT-Retrons,COG3791,EpmB*247
    9Eco8CYGJ01000003.1_369367_370491_+ myRT prediction AAA_15,RVT-Retrons,HTH_3644
    10Se72AMMS01000284.1_2640_3671_- myRT prediction Rop,CspC,RVT-Retrons44
    11St85LDYH01000006.1_757289_758224_- myRT prediction PRK10216,PRK10473,RVT-Retrons100
    12Vc137JNEW01000012.1_609188_610135_+ myRT prediction PRK10621,RVT-Retrons,carB44
    13Vc95JRBD01000006.1_125638_126585_- myRT prediction TIGR02646,RVT-Retrons,PRK10621,LysR100
    14Vp96AWJG01000250.1_32_1054_+ myRT prediction COG3950,RVT-Retrons49
    15YF79KN150731.1_1692670_1693602_- myRT prediction TIGR02646,COG3950,RVT-Retrons,DUF4263,INT_Lambda_C48
    16EC83CXYK01000012.1_74586_75524_+ myRT prediction proA,RVT-Retrons,COG3950,TIGR0264647
    *This column lists the highest sequence identity between the predicted RT and the RVT_1 domains used to build the HMMs for the different classes of RTs.

    Putative RTs in IMP-4 containing plasmids (ref1, ref2)

    indexAccession NO.myRT resultsSource
    1KM977631.1 myRT prediction KM977631.1 Klebsiella pneumoniae strain CRE1495 plasmid pIMP-1495, complete sequence
    2KT982613.1 myRT prediction KT982613.1 Klebsiella pneumoniae strain CRE 1496 plasmid pIMP1496, complete sequence
    3KT982615.1 myRT prediction KT982615.1 Escherichia coli strain CRE1505 plasmid pIMP-FS1505, complete sequence
    4KT982616.1 myRT prediction KT982616.1 Escherichia coli strain CRE1509 plasmid pIMP-HK1509, complete sequence
    5KT982618.1 myRT prediction KT982618.1 Escherichia coli strain CRE1517 plasmid pIMP-GZ1517, complete sequence
    6KT989376.1 myRT prediction KT989376.1 Escherichia coli strain CRE1515 plasmid pIMP-SZ1515, complete sequence
    7KT989598.1 myRT prediction KT989598.1 Enterobacter cloacae strain CRE1506 plasmid pIMP-SH1506, complete sequence
    8KU051707.1 myRT prediction KU051707.1 Escherichia coli strain CRE1502 plasmid pIMP-SZ1502, complete sequence
    9KU051708.1 myRT prediction KU051708.1 Klebsiella pneumoniae strain CRE1501 plasmid pIMP-SZ1501, complete sequence
    10KU051709.1 myRT prediction KU051709.1 Escherichia coli strain CRE1058 plasmid pIMP-GZ1058, complete sequence
    11KU051710.1 myRT prediction KU051710.1 Citrobacter freundii strain CRE1503 plasmid pIMP-FJ1503, complete sequence
    12KU726588.1 myRT prediction KU726588.1 Escherichia coli strain CRE1516 plasmid pIMP-DS1516, complete sequence
    13KU862632.1 myRT prediction KU862632.1 Klebsiella pneumoniae strain CRE1495 plasmid pIMP-KP1495, complete sequence
    14KU886034.1 myRT prediction KU886034.1 Klebsiella pneumoniae strain Kp1 plasmid pIMP-HZ1, complete sequence
    15KX711879.1 myRT prediction KX711879.1 Pseudomonas aeruginosa strain P378 plasmid P378-IMP, complete sequence
    16KX711880.1 myRT prediction KX711880.1 Klebsiella pneumoniae strain 1220 plasmid p1220-IMP, complete sequence
    17KY913900.1 myRT prediction KY913900.1 Klebsiella oxytoca strain pKOX3 plasmid p4-IPM, complete sequence
    18MF072962.1 myRT prediction MF072962.1 Citrobacter freundii strain P10159 plasmid pP10159-2, complete sequence
    19MF344557.1 myRT prediction MF344557.1 Klebsiella pneumoniae strain 10677 plasmid p10677-IMP, complete sequence
    20MF344559.1 myRT prediction MF344559.1 Enterobacter hormaechei strain 128379 plasmid p128379-IMP, complete sequence
    21CP028486.1 myRT prediction CP028486.1 Escherichia coli strain E41-1 plasmid p3, complete sequence
    22MH399264.1 myRT prediction MH399264.1 Enterobacter cloacae strain RJ702 plasmid pIMP26, complete sequence
    23CP033103.1 myRT prediction CP033103.1 Enterobacter hormaechei strain L51 plasmid pEHZJ1, complete sequence


    Putative RTs in blaIMP-4 containing plasmids in complete and draft genomes

    index RT coordinatesmyRT resultsSource
    1CP021328.1_367010_367631_+ myRT prediction CP021328.1 Raoultella ornithinolytica strain Ro24724 plasmid pRo24724
    2CP028952.1_32191_32812_+ myRT prediction CP028952.1 Klebsiella aerogenes strain AR_0161 plasmid unnamed
    3CP028486.1_14463_15084_- myRT prediction CP028486.1 Escherichia coli strain E41-1 plasmid p3
    4CP030080.1_280102_280723_+ myRT prediction CP030080.1 Enterobacter hormaechei strain 20710 plasmid pIMP-20710
    5CP040895.1_46257_46878_+ myRT prediction CP040895.1 Leclercia adecarboxylata strain Z96-1 plasmid pIMP-Z96-1
    6KQ089505.1_6269_6890_- myRT prediction KQ089505.1 Klebsiella quasipneumoniae strain MGH113 genomic scaffold aeurF-supercont1.11
    7RXMC01000045.1_2706_3327_- myRT prediction
    8RXMP01000055.1_1441_2062_+ myRT prediction
    9RXMR01000029.1_41905_42526_- myRT prediction


    Putative Reverse Transcriptases (ref)

    indexAccession numberGene CoordinatesmyRT resultsClassmyRT prediction
    1CAA78293.1CAA78293.1 myRT prediction RetronsRetrons
    2AAM42896.1AAM42896.1 myRT prediction RetronsRetrons
    3AFY43443.1AFY43443.1 myRT prediction GII_like_1 (CRISPR)CRISPR
    4AGI67543.1AGI67543.1 myRT prediction GII_like_3 (UG10)UG3
    5ZP_01854760.1ZP_01854760.1 myRT prediction GII_like_5GII
    6ZP_01851752.1ZP_01851752.1 myRT prediction GII_like_5CRISPR-like2
    7EKP98429.1EKP98429.1 myRT prediction UG2UG2
    8CCC73043.1CCC73043.1 myRT prediction UG2UG2
    9AEG09910.1AEG09910.1 myRT prediction UG2UG2
    10AEW72297.1AEW72297.1 myRT prediction UG3UG3
    11ACD38707.1ACD38707.1 myRT prediction UG3UG3
    12AHE72406.1AHE72406.1 myRT prediction UG4UG4
    13AGI74246.1AGI74246.1 myRT prediction UG4UG4
    14CDI94624.1CDI94624.1 myRT prediction UG5UG5
    15AHM47056.1AHM47056.1 myRT prediction UG5UG5
    16ACU61669.1ACU61669.1 myRT prediction UG6UG6
    17AHL77683.1AHL77683.1 myRT prediction UG8UG8
    18AEN62840.1AEN62840.1 myRT prediction UG8UG8
    19AFG37103.1AFG37103.1 myRT prediction UG8UG8
    20ADI30165.1ADI30165.1 myRT prediction UG9UG9
    21AGA65410.1AGA65410.1 myRT prediction UG14UG14


    Putative CRISPR-Cas associated RTs (ref)

    indexGenomeGene coordinatesmyRT resultsPrediction%identity*
    1ASPN01000006.1ASPN01000006.1_20247_22901_+ myRT prediction CRISPR34
    2AQRP01000065.1AQRP01000065.1_13318_16137_+ myRT prediction CRISPR35
    3JXXW01000010.1JXXW01000010.1_71385_73319_+ myRT prediction CRISPR60
    4ASAJ01000015.1ASAJ01000015.1_125843_128860_- myRT prediction CRISPR57
    5KL370780.1KL370780.1_93557_95149_+ myRT prediction CRISPR36
    6JWIO01000025.1JWIO01000025.1_10124_11221_+ myRT prediction CRISPR38
    7BCQS01000026.1BCQS01000026.1_4694_5707_- myRT prediction CRISPR41
    8JH470356.1JH470356.1_27166_28113_+ myRT prediction CRISPR77
    9LLVU01000015.1LLVU01000015.1_5740_7752_- myRT prediction CRISPR58
    10LOAS01000028.1LOAS01000028.1_37027_38064_- myRT prediction CRISPR48
    11JYJP01000030.1JYJP01000030.1_21534_23426_+ myRT prediction CRISPR75
    12JH992891.1JH992891.1_86001_86924_- myRT prediction CRISPR75
    13ANNX01000115.1ANNX01000115.1_14418_15371_- myRT prediction CRISPR77
    14ALWD01000163.1ALWD01000163.1_24045_25013_+ myRT prediction CRISPR85
    15ANNX01000117.1ANNX01000117.1_21795_22772_- myRT prediction CRISPR86
    16JH992901.1JH992901.1_1016250_1017311_+ myRT prediction CRISPR81
    17JXCA01000005.1JXCA01000005.1_398870_399850_- myRT prediction CRISPR82
    18ALVY01000183.1ALVY01000183.1_27387_28304_+ myRT prediction CRISPR70
    19HE972669.1HE972669.1_45936_46913_- myRT prediction CRISPR72
    20ALWB01000016.1ALWB01000016.1_12151_14244_- myRT prediction CRISPR65
    21ASMA01000004.1ASMA01000004.1_21607_22458_+ myRT prediction CRISPR46
    22JQFA01000004.1JQFA01000004.1_1149670_1151637_- myRT prediction CRISPR86
    23AJLK01000155.1AJLK01000155.1_941_2959_- myRT prediction CRISPR87
    24ASZN01000033.1ASZN01000033.1_1862_3346_- myRT prediction CRISPR53
    25LAQJ01000220.1LAQJ01000220.1_7006_7917_- myRT prediction CRISPR37
    26KK211136.1KK211136.1_10156_11052_- myRT prediction CRISPR62
    27LAKD01000050.1LAKD01000050.1_46946_48151_- myRT prediction CRISPR25
    28BAFN01000001.1BAFN01000001.1_294229_295173_+ myRT prediction CRISPR-like272
    29AJKO01000007.1AJKO01000007.1_124518_125894_- myRT prediction UG234
    30DS570667.1DS570667.1_23830_25101_- myRT prediction UNC-CRISPR30
    31CP007699.1CP007699.1_7617452_7618696_+ myRT prediction UNC-CRISPR38
    *This column lists the highest sequence identity between the predicted RT and the RVT_1 domains used to build the HMMs for the different classes of RTs.

    Putative CRISPR-Cas associated RTs with multiple origins (ref)

    indexGenomemyRT resultsPrediction/Origin
    1Streptomyces flaveus strain NRRL ISP‐5371 myRT prediction UNC-CRISPR
    2Streptomyces griseoflavus myRT prediction CRISPR-like
    3Streptomyces lydicus myRT prediction CRISPR-like
    4Streptomyces antioxidans myRT prediction CRISPR-like
    5Streptomyces sp. ScaeMP‐e10 myRT prediction CRISPR-like
    6Streptomyces clavuligerus ATCC 27064 myRT prediction UNC-CRISPR
    7Cetobacterium ceti myRT prediction CRISPR
    8Deltaproteobacteria bacterium HGW‐Deltaproteobacteria‐9 myRT prediction CRISPR+Cas1
    9Anaerolineae bacterium CG_4_9_14_3_um_filter_57_17 myRT prediction GII+Cas1
    10Fischerella sp. PCC 9339 myRT prediction CRISPR
    11Calothrix sp. PCC 7103 myRT prediction CRISPR
    12Scytonema hofmannii PCC 7110 myRT prediction CRISPR
    13Scytonema hofmanni UTEX 2349 myRT prediction CRISPR
    14Nostoc sp. 'Peltigera membranacea cyanobiont' 232 myRT prediction CRISPR
    15Mastigocladus laminosus UU774 myRT prediction CRISPR
    16Planktothrix sp. PCC 11201 strain BBR_PRJEB10991 myRT prediction CRISPR
    17Gloeocapsa sp. PCC 73106 myRT prediction CRISPR
    18Microcystis aeruginosa PCC 9717 myRT prediction CRISPR
    19Microcystis aeruginosa PCC 9701 myRT prediction CRISPR-like2
    20Limnothrix rosea IAM M-220 myRT prediction CRISPR+Cas1
    21Elainella saxicola E1 myRT prediction CRISPR+Cas1
    22Leptolyngbya sp. 'hensonii' myRT prediction CRISPR+Cas1
    23Vibrio sp. PID17_43 myRT prediction CRISPR+Cas1
    24Vibrio mexicanus strain CAIM 1540 myRT prediction CRISPR+Cas1
    25Vibrio sp. UBA2437 myRT prediction CRISPR+Cas1
    26Ignavibacteria bacterium GWB2_35_6b myRT prediction CRISPR
    27Candidatus Brocadia sinica JPN1 myRT prediction CRISPR-like2
    28delta proteobacterium ML8_D strain ML8_D myRT prediction CRISPR
    29Deltaproteobacteria bacterium CG_4_10_14_0_8_um_filter_43_12 myRT prediction CRISPR
    30Candiadtus Scalindua japonica husup-a2 myRT prediction CRISPR
    31Candidatus Methylomirabilis oxyfera strain Ru_enrich_MO1 myRT prediction CRISPR
    32Ignavibacteriales bacterium CG12_big_fil_rev_8_21_14_0_65_30_8 myRT prediction CRISPR+Cas1
    33Candidatus Marinimicrobia bacterium CG08_land_8_20_14_0_20_45_22 myRT prediction Cas6+CRISPR+Cas1
    34Nitrospirae bacterium CG01_land_8_20_14_3_00_44_22 myRT prediction CRISPR+Cas1
    35Thiotrichaceae bacterium myRT prediction CRISPR+Cas1
    36Desulfobulbus propionicus myRT prediction CRISPR+Cas1
    37Methylomonas sp. myRT prediction CRISPR+Cas1
    38Nitrosomonas marina strain Nm71 myRT prediction CRISPR+Cas1
    39Acidithiobacillus caldus strain DX myRT prediction CRISPR+Cas1
    40Gammaproteobacteria bacterium RIFOXYA12_FULL_61_12 myRT prediction CRISPR+Cas1
    41Roseobacter sp. MedPE‐SWchi myRT prediction CRISPR+Cas1
    42Rhodobacterales bacterium myRT prediction CRISPR+Cas1
    43Rhodovulum sp. MB263 myRT prediction CRISPR+Cas1
    44Rhodopseudomonas palustris PSBS myRT prediction CRISPR+Cas1
    45Stappia sp. TSB10GB4 myRT prediction CRISPR+Cas1
    46Roseospirillum parvum myRT prediction CRISPR+Cas1
    47Cohaesibacter sp. ES.047 myRT prediction CRISPR+Cas1
    48Puniceibacterium sediminis myRT prediction CRISPR
    49Deinococcus marmoris DSM 12784 myRT prediction CRISPR
    50Pseudoruegeria sabulilitoris strain GJMS‐35 myRT prediction CRISPR
    51Thauera selenatis AX myRT prediction CRISPR+Cas1
    52Thiomonas sp. 13‐66‐29 myRT prediction CRISPR+Cas1
    53Vitreoscilla filiformis myRT prediction CRISPR+Cas1
    54Burkholderiales bacterium RIFOXYC12_FULL_65_23 myRT prediction CRISPR+Cas1
    55candidate division WS1 bacterium JGI 0000059‐K21 myRT prediction CRISPR
    56Streptomyces sp. AVP053U2 myRT prediction CRISPR+Cas1
    57Streptomyces thermovulgaris myRT prediction CRISPR+Cas1
    58Thermobifida halotolerans myRT prediction CRISPR+Cas1
    59Pseudonocardia oroxyli strain CGMCC 4.3143 myRT prediction CRISPR
    60Frankia coriariae myRT prediction CRISPR
    61Actinopolyspora saharensis myRT prediction CRISPR+Cas1
    62Rhodococcus enclensis myRT prediction CRISPR+Cas1
    63Tessaracoccus bendigoensis DSM 12906 myRT prediction CRISPR+Cas1
    64Micrococcales bacterium myRT prediction CRISPR+Cas1
    65Skermania piniformis NBRC 15059 myRT prediction CRISPR+Cas1
    66Corynebacterium sp. HMSC073D01 myRT prediction CRISPR+Cas1
    67Actinomyces sp. 553 myRT prediction CRISPR+Cas1
    68Actinomyces sp. oral taxon 414 myRT prediction CRISPR+Cas1
    69Actinomyces naeslundii myRT prediction CRISPR
    70Gammaproteobacteria bacterium myRT prediction CRISPR+Cas1
    71Methylovulum psychrotolerans strain HV10_M2 myRT prediction CRISPR
    72Deltaproteobacteria bacterium strain ER2bin7 myRT prediction CRISPR
    73Desulfobacterium vacuolatum DSM 3385 strain DSM 3385 myRT prediction CRISPR
    74Acidihalobacter prosperus strain V6 myRT prediction CRISPR
    75Proteobacteria bacterium strain DOLZORAL124_50_18 myRT prediction CRISPR
    76Nitrosomonas cryotolerans myRT prediction CRISPR
    77Acetothermia bacterium UBA3560 myRT prediction CRISPR
    78Anaerolineales bacterium UBA3905 myRT prediction CRISPR
    79Chloroflexi bacterium strain JP1_8 myRT prediction CRISPR
    80Poribacteria bacterium WGA‐3G myRT prediction CRISPR2
    81Chloroflexus islandicus strain isl-2 myRT prediction CRISPR2
    82Anaerolineales bacterium JdFR‐64 myRT prediction CRISPR-like2
    83Anaerolineae bacterium CG17_big_fil_post_rev_8_21_14_2_50_57_27 myRT prediction CRISPR2
    84Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 myRT prediction GII+GIIM+TPR+COG4951
    85Anaerolineae bacterium CG2_30_64_16 myRT prediction CRISPR
    86Anaerolineaceae bacterium CAMBI-1 myRT prediction CRISPR
    87Ornatilinea apprima strain P3M‐1 myRT prediction NoRT found (Cas1 w/o RT)
    88Methylocaldum sp. 14B myRT prediction Cas6+CRISPR+Cas1
    89Gammaproteobacteria bacterium myRT prediction CRISPR+Cas1
    90Gammaproteobacteria bacterium myRT prediction CRISPR+Cas1
    91Zetaproteobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_13 myRT prediction Cas6+CRISPR+Cas1
    92Piscirickettsiaceae bacterium CG_4_10_14_0_8_um_filter_44_742 myRT prediction Cas6+CRISPR+Cas1
    93Vibrio gazogenes strain CECT 5068T myRT prediction Cas6+CRISPR+Cas1
    94Vibrio gazogenes DSM 21264 = NBRC 103151 myRT prediction Cas6+CRISPR+Cas1
    95Gammaproteobacteria bacterium strain DOLJORAL78_49_22 myRT prediction Cas6+CRISPR+Cas1
    96Pseudoalteromonas piscicida strain S2040 myRT prediction CRISPR+Cas6
    97Thermodesulfovibrio sp. N1 myRT prediction CRISPR+Cas1
    98Verrucomicrobia bacterium UBA6176 myRT prediction CRISPR+Cas1
    99Desulfovibrio sp. K3S myRT prediction CRISPR+Cas1
    100Desulfovibrio sp. UBA6079 myRT prediction Cas6+CRISPR+Cas1
    101Desulfobulbaceae bacterium A2 myRT prediction CRISPR+Cas1
    102Rhodoferax sp. UBA4127 myRT prediction CRISPR+Cas1
    103Desulfobacteraceae bacterium UBA5605 myRT prediction CRISPR+Cas1
    104Cloacimonetes bacterium UBA6081 myRT prediction CRISPR
    105Phormidium ambiguum IAM M-71 myRT prediction CRISPR+Cas1
    106Planktothrix tepida PCC 9214 myRT prediction CRISPR+Cas1
    107Phormidium sp. HE10JO myRT prediction CRISPR+Cas1
    108Spirulina major PCC 6313 myRT prediction CRISPR+Cas1
    109Dethiosulfovibrio salsuginis strain USBA 82 myRT prediction CRISPR
    110Fimbriiglobus ruber strain SP5 myRT prediction CRISPR
    111Bacteroidales bacterium UBA4639 myRT prediction CRISPR+Cas1
    112Odoribacter sp. Marseille-P2698 myRT prediction CRISPR+Cas1
    113Saprospiraceae bacterium UBA2365 myRT prediction CRISPR+Cas1
    114Paludibacter sp. 47‐17 myRT prediction CRISPR+Cas1
    115Deltaproteobacteria bacterium myRT prediction CRISPR+GIIM+Cas1
    116Ignavibacteriales bacterium UTCHB3 strain UTCHB3 myRT prediction CRISPR
    117Bacteroidales bacterium UBA5537 myRT prediction CRISPR+GIIM+Cas1
    118Candidatus Cloacimonetes bacterium myRT prediction CRISPR+GIIM+Cas1
    119candidate division KSB1 bacterium 4484_188 strain 4484_188 myRT prediction CRISPR+GIIM
    120Bacteroidetes bacterium myRT prediction Cas6+CRISPR+Cas1
    121Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 myRT prediction CRISPR+Cas1
    122Sulfurimonas sp. RIFOXYD2_FULL_37_8 myRT prediction CRISPR
    123Sulfurospirillum sp. UBA6791 myRT prediction CRISPR+Cas1
    124Sulfurimonas sp. RIFOXYB12_FULL_35_9 myRT prediction CRISPR+Cas1
    125Arcobacter thereius LMG 24486 myRT prediction CRISPR+Cas1
    126Campylobacter concisus Lasto220.96 myRT prediction CRISPR+Cas1
    127Campylobacter jejuni myRT prediction CRISPR+Cas1
    128Nitratiruptor tergarcus DSM 16512 myRT prediction CRISPR+GIIM+Cas1
    129[Eubacterium] rectale strain AF06-19 myRT prediction CRISPR
    130Eubacterium sp. 38_16 myRT prediction CRISPR+cas1_HMARI
    131Lachnospiraceae bacterium C10 myRT prediction CRISPR+cas1_HMARI
    132Ruminococcaceae bacterium P7 myRT prediction UNC+cas1_HMARI
    133Lachnospiraceae bacterium UBA1066 myRT prediction CRISPR-like2+COG4951
    134Lachnospiraceae bacterium UBA4364 myRT prediction CRISPR+COG4951
    135Geobacillus lituanicus strain N‐3 myRT prediction CRISPR+COG4951
    136Anoxybacillus thermarum strain AF/04 myRT prediction CRISPR+COG4951
    137Bacillus sp. SA5d‐4 myRT prediction CRISPR+COG4951
    138Candidatus Magnetoglobus multicellularis str. Araruama myRT prediction CRISPR+COG4951
    139Fusibacter sp. 3D3 myRT prediction CRISPR+Primase
    140Candidatus Magnetoglobus multicellularis str. Araruama myRT prediction CRISPR+COG4951
    141Firmicutes bacterium UBA5625 myRT prediction CRISPR+COG4951
    142Armatimonadetes bacterium UBA5377 myRT prediction CRISPR-like2
    143Lutibacter maritimus myRT prediction Retron-CRISPR
    144Lutibacter sp. LP1 myRT prediction Retron-CRISPR
    145Roseivirga sp. UBA6061 myRT prediction Retron-CRISPR
    146Cyclobacterium halophilum myRT prediction Retron-CRISPR
    147Lewinella agarilytica strain DSM 24740 myRT prediction Retron-CRISPR
    148Haliscomenobacter hydrossis DSM 1100 myRT prediction Retron-CRISPR
    149Phaeodactylibacter xiamenensis KD52 myRT prediction Retron-CRISPR
    150Cytophagales bacterium TFI 002 myRT prediction Retron-CRISPR
    151Haliscomenobacter hydrossis DSM 1100 myRT prediction Retron-CRISPR
    152Saprospiraceae bacterium UBA2329 myRT prediction Retron-CRISPR
    153Caloramator australicus RC3 myRT prediction UNC+ligD_pol
    154Basfia succiniciproducens myRT prediction Abi-P2-CRISPR
    155Haemophilus haemolyticus HK386 myRT prediction Abi-P2-CRISPR
    156Fusicatenibacter saccharivorans myRT prediction CRISPR+Cas1


    CRISPR-Cas RTs fused to primase domain (ref)

    indexGIAccession numberContigGenomemyRT results
    11199433876OUQ50181.1NFLQ01000008.1Lachnoclostridium sp. An118 myRT prediction
    21052850879SCJ09347.1FMGE01000008.1uncultured Clostridium sp. myRT prediction
    3524753061CDE54378.1FR900183.1Roseburia sp. CAG:303 myRT prediction
    41222070497WP_090127331.1FCNR01000042.1Eubacteriaceae bacterium CHKCI004 myRT prediction
    51052930533SCJ79569.1FMGY01000027.1uncultured Lachnospira sp. myRT prediction
    61236125999WP_094925697.1NPIA01000007.1Bacillus sp. SA5d-4 myRT prediction
    7763085032KIQ94502.1JXTH01000022.1Anoxybacillus thermarum strain AF/04 myRT prediction
    81229394848ASS88148.1CP017692.1Geobacillus lituanicus strain N-3 myRT prediction
    9571787965ETR68993.1ATBP01000769.1Candidatus Magnetoglobus multicellularis str. Araruama myRT prediction
    101483099363RJQ63776.1QZKK01000034.1Desulfobacteraceae bacterium isolate SURF_15 myRT prediction
    111079178442OFI07052.1LZFO01000005.1Clostridium acetireducens DSM 10703 myRT prediction


    Putative RTs in human gastrointestinal microbiota (ref)

    indexIdentifiermyRT results
    1ERR1022271 myRT prediction
    2ERR2230141 myRT prediction
    3ERR2230119 myRT prediction
    4ERR1022414 myRT prediction
    5ERR2221211 myRT prediction
    6ERR1022413 myRT prediction
    7ERR2230138 myRT prediction
    8ERR2221142 myRT prediction
    9ERR2221151 myRT prediction
    10ERR1022353 myRT prediction
    11ERR1022439 myRT prediction
    12ERR1203972 myRT prediction
    13ERR1022318 myRT prediction
    14ERR2221161 myRT prediction
    15ERR2221398 myRT prediction
    16ERR2221275 myRT prediction
    17ERR1022423 myRT prediction
    18ERR1022437 myRT prediction
    19ERR171257 myRT prediction