myRT


Top 15 domains that tend to co-occur with Retrons RT in their genomic neighborhood

Note 1: Specificity score -- ranges between 0 and 1, with 1 indicating that a domain is exclusively associated with Retrons RT.
Note 2: X*2, if found in the table, either means one gene has two consecutive X domains or two adjacent genes both have X domain.
Note 3: If two instances of a domain X are found in the neighborhood of a particular RT R, it will be counted as 2 occurences of domain X, but 1 co-occurance of X and R).
Note 4: click on 'link' to retrieve all genomes that contain the domain, and 'piechart' to see this domain's distribution among different RTs (including Retrons).
complete genomes
Domains Number of occurrences (%) Specificity score Co-occurring RTs
RVT-Retrons2979 (100%)1 (2973/2973)link | piechart
HTH_XRE (smart00530)283 (9%)0.415 (277/667)link | piechart
PRK10473 (MdtL family multidrug efflux MFS transporter)207 (7%)0.986 (207/210)link | piechart
AAA_15 (pfam13175)155 (5%)0.886 (155/175)link | piechart
PRK09692 (Integrase; provisional)153 (5%)0.447 (153/342)link | piechart
COG3950 (Predicted ATP-binding protein involved in virulence )132 (4%)0.985 (132/134)link | piechart
PRK09678 (DNA-binding transcriptional regulator; Provisional)124 (4%)0.674 (124/184)link | piechart
PRK10216 (HTH-type transcriptional regulator YidZ)122 (4%)0.976 (122/125)link | piechart
TIGR02646 (TIGR02646 family protein)117 (4%)0.967 (117/121)link | piechart
slmA (PRK09480)115 (4%)0.975 (115/118)link | piechart
pyrE (TIGR00336)114 (4%)0.942 (114/121)link | piechart
PRK08617 (acetolactate synthase AlsS)110 (4%)0.965 (110/114)link | piechart
dut (TIGR00576)108 (4%)0.931 (108/116)link | piechart
rph (PRK00173)104 (3%)1 (104/104)link | piechart
Q (PHA02536)83 (3%)0.722 (83/115)link | piechart


draft genomes
Domains Number of occurrences (%) Specificity score Co-occurring RTs
RVT-Retrons30862 (100%)1 (30825/30825)link | piechart
PRK08617 (acetolactate synthase AlsS)3319 (11%)1 (3319/3320)link | piechart
PRK10473 (MdtL family multidrug efflux MFS transporter)2132 (7%)0.993 (2132/2146)link | piechart
HTH_XRE (smart00530)2126 (7%)0.43 (2089/4863)link | piechart
COG3950 (Predicted ATP-binding protein involved in virulence )1494 (5%)0.982 (1484/1511)link | piechart
INT_P4_C (cd00801)1138 (4%)0.508 (1136/2235)link | piechart
TIGR02646 (TIGR02646 family protein)1113 (4%)0.968 (1113/1150)link | piechart
pyrE (TIGR00336)941 (3%)0.986 (941/954)link | piechart
slmA (PRK09480)934 (3%)0.994 (934/940)link | piechart
dut (TIGR00576)920 (3%)0.955 (920/963)link | piechart
rph (PRK00173)896 (3%)0.982 (896/912)link | piechart
AAA_15 (pfam13175)801 (3%)0.847 (801/946)link | piechart
Histone_HNS (pfam00816)738 (2%)0.972 (738/759)link | piechart
Q (PHA02536)618 (2%)0.856 (618/722)link | piechart
RVT-Retrons*2594 (2%)1 (594/594)link | piechart