myRT


Top 15 domains that tend to co-occur with UG14 RT in their genomic neighborhood

Note 1: Specificity score -- ranges between 0 and 1, with 1 indicating that a domain is exclusively associated with UG14 RT.
Note 2: X*2, if found in the table, either means one gene has two consecutive X domains or two adjacent genes both have X domain.
Note 3: If two instances of a domain X are found in the neighborhood of a particular RT R, it will be counted as 2 occurences of domain X, but 1 co-occurance of X and R).
Note 4: click on 'link' to retrieve all genomes that contain the domain, and 'piechart' to see this domain's distribution among different RTs (including UG14).
complete genomes
Domains Number of occurrences (%) Specificity score Co-occurring RTs
RVT-UG1438 (100%)1 (38/38)link | piechart
Nudix_Hydrolase_7 (cd04664)10 (26%)1 (10/10)link | piechart
KOG0399 (KOG0399, Glutamate synthase )9 (24%)0.818 (9/11)link | piechart
COG2361 (Uncharacterized conserved protein, contains HEPN domain )9 (24%)0.643 (9/14)link | piechart
COG1669 (Predicted nucleotidyltransferase )9 (24%)0.391 (9/23)link | piechart
Uma2 (pfam05685)2 (5%)0.08 (2/25)link | piechart
RusA (pfam05866)2 (5%)0.4 (2/5)link | piechart
PRK07726 (DNA topoisomerase 3)2 (5%)0.033 (1/30)link | piechart
GT1_Gtf-like (cd03784)2 (5%)1 (2/2)link | piechart
DUF2332 (pfam10094)2 (5%)1 (2/2)link | piechart
COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )2 (5%)0.037 (2/54)link | piechart
DNA-binding transcriptional repressor AcrR (PRK10668)2 (5%)0.01 (2/195)link | piechart
YoaP (pfam14268)1 (3%)0.25 (1/4)link | piechart
YbjD (COG3593)*21 (3%)0.042 (1/24)link | piechart
YbjD (COG3593)1 (3%)0.026 (1/38)link | piechart


draft genomes
Domains Number of occurrences (%) Specificity score Co-occurring RTs
RVT-UG14208 (100%)1 (208/208)link | piechart
UvrD (COG0210)13 (6%)0.029 (12/413)link | piechart
RVT-UG14*212 (6%)1 (12/12)link | piechart
Nudix_Hydrolase_7 (cd04664)8 (4%)0.615 (8/13)link | piechart
UvrD (COG0210)*27 (3%)0.041 (7/171)link | piechart
ResIII (pfam04851)7 (3%)0.119 (7/59)link | piechart
proA (TIGR00407)7 (3%)0.021 (7/333)link | piechart
N6_N4_Mtase (pfam01555)7 (3%)0.037 (7/189)link | piechart
HTH_XRE (smart00530)7 (3%)0.001 (7/4861)link | piechart
guaA (PRK00074)6 (3%)0.026 (6/227)link | piechart
Cas3''_I (cd10013)6 (3%)0.6 (6/10)link | piechart
YodL (pfam14191)5 (2%)0.042 (5/119)link | piechart
TTRAP (pfam14203)5 (2%)0.132 (5/38)link | piechart
SF2_C_EcoAI-like (cd18799)5 (2%)0.147 (5/34)link | piechart
LPD18 (pfam18832)5 (2%)0.106 (5/47)link | piechart