myRT
Top 15 domains that tend to co-occur with UG17 RT in their genomic neighborhood
Note 1: Specificity score -- ranges between 0 and 1, with 1 indicating that a domain is exclusively associated with UG17 RT.Note 2: X*2, if found in the table, either means one gene has two consecutive X domains or two adjacent genes both have X domain.
Note 3: If two instances of a domain X are found in the neighborhood of a particular RT R, it will be counted as 2 occurences of domain X, but 1 co-occurance of X and R).
Note 4: click on 'link' to retrieve all genomes that contain the domain, and 'piechart' to see this domain's distribution among different RTs (including UG17).
| draft genomes | |||
|---|---|---|---|
| Domains | Number of occurrences (%) | Specificity score | Co-occurring RTs |
| RVT-UG17 | 2027 (100%) | 1 (2023/2023) | link | piechart |
| SLATT_5 (pfam18160) | 1547 (76%) | 0.865 (1546/1788) | link | piechart |
| Caudo_TAP (pfam02413) | 197 (10%) | 0.583 (197/338) | link | piechart |
| PRK09692 (Integrase; provisional) | 130 (6%) | 0.064 (130/2021) | link | piechart |
| Peptidase_S74 (pfam13884) | 120 (6%) | 0.574 (120/209) | link | piechart |
| Psu (pfam07455) | 108 (5%) | 0.182 (108/595) | link | piechart |
| Collar (pfam07484) | 105 (5%) | 0.583 (105/180) | link | piechart |
| PRK10597 (DNA damage-inducible protein I; Provisional) | 89 (4%) | 0.226 (89/394) | link | piechart |
| phage_tail_N (pfam08400) | 87 (4%) | 0.569 (87/153) | link | piechart |
| Macro_Appr_pase (cd02900) | 86 (4%) | 0.977 (86/88) | link | piechart |
| prfC (TIGR00503) | 83 (4%) | 0.247 (83/336) | link | piechart |
| phage_P2_V (TIGR01644) | 82 (4%) | 0.656 (82/125) | link | piechart |
| Phage_fiber (pfam03335) | 77 (4%) | 0.538 (77/143) | link | piechart |
| tail_comp_S (TIGR01635) | 70 (3%) | 0.843 (70/83) | link | piechart |
| Phage_fiber (pfam03335)*4 | 62 (3%) | 0.585 (62/106) | link | piechart |