myRT
Top 15 domains that tend to co-occur with UG21 RT in their genomic neighborhood
Note 1: Specificity score -- ranges between 0 and 1, with 1 indicating that a domain is exclusively associated with UG21 RT.Note 2: X*2, if found in the table, either means one gene has two consecutive X domains or two adjacent genes both have X domain.
Note 3: If two instances of a domain X are found in the neighborhood of a particular RT R, it will be counted as 2 occurences of domain X, but 1 co-occurance of X and R).
Note 4: click on 'link' to retrieve all genomes that contain the domain, and 'piechart' to see this domain's distribution among different RTs (including UG21).
| complete genomes | |||
|---|---|---|---|
| Domains | Number of occurrences (%) | Specificity score | Co-occurring RTs |
| RVT-UG21 | 2 (100%) | 1 (2/2) | link | piechart |
| YSH1 (COG1236) | 1 (50%) | 0.167 (1/6) | link | piechart |
| YkfC (COG3344) | 1 (50%) | 0.003 (1/288) | link | piechart |
| YdiL (COG1266) | 1 (50%) | 0.024 (1/42) | link | piechart |
| TetR_N (pfam00440) | 1 (50%) | 0.015 (1/66) | link | piechart |
| TetR_C_18 (pfam17923) | 1 (50%) | 1 (1/1) | link | piechart |
| PBP2_SsuA (cd13557) | 1 (50%) | 0.5 (1/2) | link | piechart |
| Nitroreductase_2 | 1 (50%) | 0.167 (1/6) | link | piechart |
| group_II_RT_mat (TIGR04416) | 1 (50%) | 0.003 (1/376) | link | piechart |
| CPBP | 1 (50%) | 0.063 (1/16) | link | piechart |