myRT
Top 15 domains that tend to co-occur with UG26 RT in their genomic neighborhood
Note 1: Specificity score -- ranges between 0 and 1, with 1 indicating that a domain is exclusively associated with UG26 RT.Note 2: X*2, if found in the table, either means one gene has two consecutive X domains or two adjacent genes both have X domain.
Note 3: If two instances of a domain X are found in the neighborhood of a particular RT R, it will be counted as 2 occurences of domain X, but 1 co-occurance of X and R).
Note 4: click on 'link' to retrieve all genomes that contain the domain, and 'piechart' to see this domain's distribution among different RTs (including UG26).
| complete genomes | |||
|---|---|---|---|
| Domains | Number of occurrences (%) | Specificity score | Co-occurring RTs |
| RVT-UG26 | 5 (100%) | 1 (5/5) | link | piechart |
| PDDEXK_9 (pfam08011) | 3 (60%) | 0.25 (3/12) | link | piechart |
| COG1602 (Uncharacterized protein ) | 3 (60%) | 1 (3/3) | link | piechart |
| COG1579 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ) | 3 (60%) | 0.75 (3/4) | link | piechart |
| Big_2 (pfam02368) | 3 (60%) | 0.231 (3/13) | link | piechart |
| AAA-ATPase_like (pfam09820) | 3 (60%) | 0.2 (3/15) | link | piechart |
| HpnR_B12_rSAM (TIGR04367)*2 | 2 (40%) | 1 (1/1) | link | piechart |
| HpnR_B12_rSAM (TIGR04367) | 2 (40%) | 1 (1/1) | link | piechart |
| YgiQ (COG1032) | 1 (20%) | 0.143 (1/7) | link | piechart |
| rve (pfam00665) | 1 (20%) | 0.003 (1/360) | link | piechart |
| PHA02517 (putative transposase OrfB; Reviewed) | 1 (20%) | 0 (1/2144) | link | piechart |
| PE_PPE_C (pfam12484) | 1 (20%) | 0.5 (1/2) | link | piechart |
| PE (pfam00934) | 1 (20%) | 0.25 (1/4) | link | piechart |
| INT_ICEBs1_C_like (cd01189) | 1 (20%) | 0.02 (1/51) | link | piechart |
| HTH_32 (pfam13565) | 1 (20%) | 0.011 (1/88) | link | piechart |