myRT
Top 15 domains that tend to co-occur with UG6 RT in their genomic neighborhood
Note 1: Specificity score -- ranges between 0 and 1, with 1 indicating that a domain is exclusively associated with UG6 RT.Note 2: X*2, if found in the table, either means one gene has two consecutive X domains or two adjacent genes both have X domain.
Note 3: If two instances of a domain X are found in the neighborhood of a particular RT R, it will be counted as 2 occurences of domain X, but 1 co-occurance of X and R).
Note 4: click on 'link' to retrieve all genomes that contain the domain, and 'piechart' to see this domain's distribution among different RTs (including UG6).
| complete genomes | |||
|---|---|---|---|
| Domains | Number of occurrences (%) | Specificity score | Co-occurring RTs |
| RVT-UG6 | 101 (100%) | 1 (101/101) | link | piechart |
| group_II_RT_mat (TIGR04416) | 94 (93%) | 0.25 (94/376) | link | piechart |
| dnaG (TIGR01391) | 93 (92%) | 0.712 (94/132) | link | piechart |
| dnaG (TIGR01391)*2 | 87 (86%) | 0.978 (87/89) | link | piechart |
| nitrilase (cl11424) | 86 (85%) | 0.43 (86/200) | link | piechart |
| MPP_PrpA_PrpB (cd07424) | 80 (79%) | 0.964 (80/83) | link | piechart |
| PRK09182 (DNA polymerase III subunit epsilon; Validated) | 4 (4%) | 0.667 (4/6) | link | piechart |
| DDE_Tnp_1_5 (pfam13737) | 3 (3%) | 0.041 (3/74) | link | piechart |
| ALP_N-acyl_transferase (cd07571) | 3 (3%) | 1 (3/3) | link | piechart |
| sbcB (PRK11779) | 2 (2%) | 0.023 (2/87) | link | piechart |
| ExoI_N (cd06138) | 2 (2%) | 0.667 (2/3) | link | piechart |
| YafV (COG0388) | 1 (1%) | 1 (1/1) | link | piechart |
| Transposase_mut (pfam00872) | 1 (1%) | 0.008 (1/130) | link | piechart |
| Tra5 (COG2801) | 1 (1%) | 0.004 (1/239) | link | piechart |
| Toprim_2 (pfam13155) | 1 (1%) | 0.024 (1/41) | link | piechart |
| draft genomes | |||
|---|---|---|---|
| Domains | Number of occurrences (%) | Specificity score | Co-occurring RTs |
| RVT-UG6 | 71 (100%) | 1 (71/71) | link | piechart |
| group_II_RT_mat (TIGR04416) | 56 (79%) | 0.015 (56/3795) | link | piechart |
| nitrilase (cl11424) | 35 (49%) | 0.025 (35/1389) | link | piechart |
| dnaG (TIGR01391) | 34 (48%) | 0.077 (38/492) | link | piechart |
| ALP_N-acyl_transferase (cd07571) | 11 (15%) | 0.5 (11/22) | link | piechart |
| PRK09182 (DNA polymerase III subunit epsilon; Validated) | 9 (13%) | 0.184 (9/49) | link | piechart |
| dnaG (TIGR01391)*2 | 5 (7%) | 0.333 (6/18) | link | piechart |
| ExoI_N (cd06138) | 4 (6%) | 0.571 (4/7) | link | piechart |
| DnaG (COG0358) | 4 (6%) | 0.077 (38/492) | link | piechart |
| DDE_Tnp_1_5 (pfam13737) | 4 (6%) | 0.033 (4/123) | link | piechart |
| sbcB (PRK11779) | 3 (4%) | 0.007 (3/411) | link | piechart |
| Mod (COG2189) | 3 (4%) | 0.061 (3/49) | link | piechart |
| HsdM (COG0286) | 3 (4%) | 0.004 (3/856) | link | piechart |
| AAA_21 (pfam13304) | 3 (4%) | 0.005 (3/603) | link | piechart |
| Toprim_3 (pfam13362) | 2 (3%) | 0.041 (2/49) | link | piechart |